That's not a problem. For better tracking, each fund scheme in your Smart Portfolio will have a unique folio number. Lets say you have invested in two portfolios (say, Growth and Steady), and also have a Personal Portfolio of all your individual investments decided by you. If the same fund (say ICICI Prudential Equity Scheme) exists in all three portfolios, we generate separate folio numbers for each portfolio for ease of tracking.
PS: You can view the folio numbers for your investments when you download your transaction history in XLS format.